List of publications also available via Google Scholar.

Cooltools: enabling high-resolution Hi-C analysis in Python.  2022.
Bioframe: Operations on Genomic Intervals in Pandas Dataframes.  2022.
Predicting 3D genome folding from DNA sequence with Akita.  2020.
Molecular basis of CTCF binding polarity in genome folding.  2020.
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.  2019.
Principles of meiotic chromosome assembly revealed in S. cerevisiae.  2019.
Highly structured homolog pairing reflects functional organization of the Drosophila genome.  2019.
Heterochromatin drives compartmentalization of inverted and conventional nuclei.  2019.
Chromatin organization by an interplay of loop extrusion and compartmental segregation.  2018.
Two independent modes of chromatin organization revealed by cohesin removal.  2017.
SMC complexes differentially compact mitotic chromosomes according to genomic context.  2017.
FISH-ing for captured contacts: towards reconciling FISH and 3C.  2017.
Emerging Evidence of Chromosome Folding by Loop Extrusion.  2017.
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.  2016.
Formation of Chromosomal Domains by Loop Extrusion.  2016.
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.  2016.
Modeling chromosomes: Beyond pretty pictures.  2015.
Genome-wide maps of nuclear lamina interactions in single human cells.  2015.
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in textitS. pombe.  2014.
Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions.  2014.
Organization of the mitotic chromosome.  2013.
Iterative correction of Hi-C data reveals hallmarks of chromosome organization.  2012.
Higher order chromatin structure: bridging physics and biology.  2012.
High order chromatin architecture shapes the landscape of chromosomal alterations in cancer.  2011.