We actively develop computational tools with the Open Chromosome Collective (Open2C).
Open2C repositories under active development include:
bioframe: flexible workflows with genomic interval dataframes.
cooltools: analysis of chromosome conformation data stored in the cooler format.
polychrom: for biophysical models of chromosome folding.
For neural network models of genome folding see:
akita: for predicting mammalian interphase genome folding from DNA sequence