Fudenberg Research Group
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Maxim Imakaev
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Bioframe: Operations on Genomic Intervals in Pandas Dataframes
Cooltools: enabling high-resolution Hi-C analysis in Python
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos
Heterochromatin drives compartmentalization of inverted and conventional nuclei
Chromatin organization by an interplay of loop extrusion and compartmental segregation
FISH-ing for captured contacts: towards reconciling FISH and 3C
Emerging Evidence of Chromosome Folding by Loop Extrusion
Formation of Chromosomal Domains by Loop Extrusion
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
Genome-wide maps of nuclear lamina interactions in single human cells
Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions
Organization of the mitotic chromosome
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
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